Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012032: Chloroflexus sp. Y-400-fl, complete genome

NCBI: NC_012032

Host Lineage: Chloroflexus; Chloroflexus; Chloroflexaceae; Chloroflexales; Chloroflexi; Bacteria

General Information: Chloroflexus sp Y-400-fl (DSM 637, ATCC 29364) was isolated from an alkaline hot spring Octopus Spring, an alkaline hot spring in Yellowstone National Park, USA. Anoxygenic photosynthesis, Carbon fixation.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
139841942373325315Island text1.9027133.861335.512Neighbours55BLASTN+398419.gbk
2448161*47509926939Island text2.4792139.644142.9806Neighbours55BLASTN+IslandViewer 448161.gbk
31602812162414221331Island text1.4829432.423437.8426Neighbours55BLASTN+1602812.gbk
41827244185693429691Island text2.3928840.453833.9821Neighbours55BLASTNIslandViewer 1827244.gbk
51878854190333224479Island text1.3561930.775830.0707Neighbours11BLASTN+1878854.gbk
62059000208483725838Island text1.8216136.576334.8747Neighbours55BLASTNIslandViewer 2059000.gbk
72925000294282117822Island text1.5231627.067138.9694Neighbours11BLASTN+2925000.gbk
83110134313391123778Island text1.651444.878135.1039Neighbours11+IslandViewer 3110134.gbk
93281869*330162619758Island text1.607129.909433.882Neighbours11BLASTN+3281869.gbk
104385311440348318173Island text1.4805431.657338.8659Neighbours55BLASTN4385311.gbk