Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_012026: Anaplasma marginale str. Florida, complete genome

NCBI: NC_012026

Host Lineage: Anaplasma marginale; Anaplasma; Anaplasmataceae; Rickettsiales; Proteobacteria; Bacteria

General Information: Anaplasma marginale str. Florida. was isolated from pooled blood samples from naturally infected cattle in Florida. The Florida strain is virulent and non-tick transmitted. This organism is the causative agent of bovine anaplasmosis and is an obligate intracellular pathogen. Transmission occurs via an arthropod vector (tick) and is a major problem in tropical regions where it causes severe morbidity in cattle populations. The bacterium lives intracellularly within membrane-bound vesicles in the host erythrocyte, a cell type which it specifically targets, resulting in severe anemia for the host organism.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
121385*4495323569Island text1.4654535.031652.0161Neighbours21BLASTN+21385.gbk
275812*9977523964Island text1.4054939.019954.8971BLASTN75812.gbk
329992332173321811Island text1.5387637.609454.5621299923.gbk
4415447*43902323577Island text1.4295236.612448.5626BLASTN415447.gbk
596000098218522186Island text2.1171635.986154.8544NeighboursBLASTN960000.gbk
61034724*105518720464Island text1.7291535.921346.9071Neighbours21BLASTN1034724.gbk
71135041*116545030410Island text2.7254943.643922.0847Neighbours323BLASTN1135041.gbk