Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011999: Macrococcus caseolyticus JCSC5402, complete genome

NCBI: NC_011999

Host Lineage: Macrococcus caseolyticus; Macrococcus; Staphylococcaceae; Bacillales; Firmicutes; Bacteria

General Information: This methicillin-resistant strain was isolated from animal meat in a supermarket. This organism is a large gram positive coccus, related to the Staphylococcus, often associated meat and sheep, goat and cattle milk.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1198769*22025721489Island text1.66725.286835.6377Neighbours21BLASTN+198769.gbk
253093055100020071Island text1.5510724.272535.8692Neighbours21BLASTN530930.gbk
3558057*58118523129Island text1.7936327.257340.8343Neighbours21BLASTN+558057.gbk
472835376039632044Island text1.8313432.501135.5294Neighbours21BLASTN728353.gbk
5813978*83568421707Island text1.4915925.735740.2668Neighbours21BLASTN813978.gbk
6936500*96052724028Island text1.775529.581130.2357Neighbours21BLASTN+936500.gbk
71320159*133954619388Island text1.5304724.632236.9838Neighbours21BLASTN1320159.gbk
81567818158634918532Island text1.545624.255231.9893Neighbours21BLASTN+1567818.gbk
91633262*165161518354Island text1.7180524.917937.8913Neighbours21BLASTN1633262.gbk
102023248*204877425527Island text1.7274123.866141.083Neighbours21BLASTN+2023248.gbk