Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011992: Acidovorax ebreus TPSY, complete genome

NCBI: NC_011992

Host Lineage: Acidovorax ebreus; Acidovorax; Comamonadaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Acidovorax ebreus is able to anaerobically oxidize iron and uranium when coupled with the reduction of nitrate. Acidovorax ebreus sp. TPSY may be important for the remediation of uranium in contaminated environments. Isolated from groundwater collected from the U.S. Department of Energy Integrated Field Research Challenge site at Oak Ridge, TN, USA.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1392534*41503522502Island text1.6181122.00225.6081Neighbours11BLASTN+392534.gbk
257100058859917600Island text1.9795218.625416.4941Neighbours11BLASTN+571000.gbk
371710774525928153Island text2.5738428.583731.2408Neighbours11BLASTN717107.gbk
477390579750923605Island text1.4882920.567222.8269Neighbours11BLASTN773905.gbk
586317488672923556Island text1.6250517.591821.0927Neighbours11BLASTN+863174.gbk
6889985*91136221378Island text1.4897418.786521.9698Neighbours11BLASTN889985.gbk
71038985105881219828Island text2.1755619.714325.7446Neighbours11BLASTN+1038985.gbk
81179084*120383024747Island text1.9813521.963922.919Neighbours11BLASTN+1179084.gbk
91213726123279819073Island text1.8047818.780420.2339Neighbours11BLASTN+1213726.gbk
101234610*125759922990Island text2.2112122.462724.4023NeighboursBLASTN+1234610.gbk
111318691*134516726477Island text2.2138324.805817.2497Neighbours11BLASTN+1318691.gbk
121381843140167719835Island text1.6365118.327517.4382Neighbours11BLASTN+IslandViewer 1381843.gbk
131505106*152858323478Island text1.3853819.084430.4057Neighbours11BLASTN+1505106.gbk
141912200193159919400Island text1.6460519.271614.4095Neighbours11BLASTN+1912200.gbk
151968258199851030253Island text2.0749525.020620.4788Neighbours11BLASTN+IslandViewer 1968258.gbk
162279752232691047159Island text1.7343421.486316.9931Neighbours11BLASTN+IslandViewer 2279752.gbk
173375929341716741239Island text2.1455525.977121.4472Neighbours11BLASTN+IslandViewer 3375929.gbk
183550566357056119996Island text1.7116519.988213.5481Neighbours11BLASTN+IslandViewer 3550566.gbk
193615517*363908923573Island text1.5930618.564623.724Neighbours11BLASTN+3615517.gbk
203752867377559922733Island text1.6095422.705617.3369Neighbours11BLASTN+3752867.gbk