Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_011985: Agrobacterium radiobacter K84 chromosome 1, complete genome

NCBI: NC_011985

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain has been developed for worldwide commercial use to control crown gall. This species is used commercially to control crown gall, a tumorogenic plant disease caused by the ubiquitous soil-borne pathogen Agrobacterium tumefaciens, which affects susceptible woody plants worldwide. The pathogen is responsible for nursery and orchard losses among stone fruit trees, grapes, apples, pears, nut trees, caneberries, clematis, hops, kiwifruit, persimmons, roses and many ornamental annuals, trees and shrubs. Infected plants are usually weakened and unproductive due to their damaged root system.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
161003*10563344631Island text1.9476429.267734.4513Neighbours11BLASTN+IslandViewer 61003.gbk
2194973*21836723395Island text2.1999730.539838.4655Neighbours11BLASTN+194973.gbk
31831961185521123251Island text1.6099828.201824.3186Neighbours11BLASTN+IslandViewer 1831961.gbk
42902000292191719918Island text1.5424332.096315.4928Neighbours11BLASTN+IslandViewer 2902000.gbk
53282924*330901226089Island text2.1518831.304739.2492Neighbours11BLASTN+IslandViewer 3282924.gbk
63380842*340410223261Island text1.5197528.617527.7744Neighbours11BLASTN+IslandViewer 3380842.gbk
73869998389186921872Island text1.4766130.031620.6973Neighbours11BLASTN+IslandViewer 3869998.gbk
83892630392466432035Island text2.2441436.168324.8438Neighbours11BLASTN+IslandViewer 3892630.gbk