Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011978: Thermotoga neapolitana DSM 4359, complete genome

NCBI: NC_011978

Host Lineage: Thermotoga neapolitana; Thermotoga; Thermotogaceae; Thermotogales; Thermotogae; Bacteria

General Information: This hyperthermophilic organism was first isolated from a black smoker in the bay near Naples, Italy in 1986. This organism, like other Thermotoga, produces a vast quantity of hydrogen in batch culture. It is being considered for use in projects to utilize waste carboydrates for the production of hydrogen gas for industrial purposes. A number of thermostable enzymes such as alkaline phosphatase are also produced by this bacterium and may be of use for industrial purposes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1150594161026552Island text1.8117131.22423.433Neighbours317BLASTN+15059.gbk
235146536909917635Island text1.4598324.233939.7795Neighbours317+IslandViewer 351465.gbk
3493800*51936725568Island text2.040438.316630.186Neighbours317BLASTN493800.gbk
4699500*72273223233Island text1.4360925.802529.2971Neighbours317IslandViewer 699500.gbk
5975333*100082825496Island text2.0876925.690548.9117Neighbours317BLASTN975333.gbk
61046279*106837222094Island text1.5624425.800515.4444Neighbours317BLASTN+IslandViewer 1046279.gbk
71500663152082120159Island text1.565724.92532.4948Neighbours21BLASTN+1500663.gbk
81581994160787925886Island text1.6167825.443233.2385Neighbours317BLASTN+1581994.gbk
91812000*183476522766Island text1.5393723.069740.6444Neighbours317BLASTN1812000.gbk