Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011901: Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, complete

NCBI: NC_011901

Host Lineage: Thioalkalivibrio sulfidophilus; Thioalkalivibrio; Ectothiorhodospiraceae; Chromatiales; Proteobacteria; Bacteria

General Information: Obligately chemolithoautotrophic, haloalkaliphilic, mesophilic, microaerophilic and sulfur-oxidizing bacterium. Uses CO2 as a carbon source and reduced inorganic sulfur compounds as an energy source. Utilizes ammonium and urea, but not nitrate or nitrite, as a N-source. Isolated from a full-scale Thiopaq bioreactor in the Netherlands used to remove H2S from biogas. Thioalkalivibrio species are commonly isolated from soda lakes and tend to dominate the microbial community of hypersaline soda lakes. These organisms have a pH optimum of 10 and are able to oxidize hydrogen sulfide to elemental sulfur. Thioalkalivibrio species have also been isolated from sulfide oxidizing bioreactors which remove sulfide from refinery and natural gas.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1392156338824174Island text1.5420921.87520.307Neighbours11BLASTNIslandViewer 39215.gbk
2342777*36771724941Island text3.1098430.906537.9673Neighbours11BLASTN+IslandViewer 342777.gbk
3491783*52043828656Island text3.0398431.594233.3253Neighbours11BLASTN+IslandViewer 491783.gbk
462571266531339602Island text1.7261424.707332.1753Neighbours11BLASTN+IslandViewer 625712.gbk
583708586771530631Island text3.6152533.42341.8011Neighbours11BLASTN+IslandViewer 837085.gbk
61122357*114576023404Island text2.0754128.086127.828Neighbours11BLASTN+IslandViewer 1122357.gbk
71398376142787629501Island text3.469230.98541.4463Neighbours11BLASTN+IslandViewer 1398376.gbk
81860887191210351217Island text2.9998830.870925.9476Neighbours11BLASTN+IslandViewer 1860887.gbk
91916602193652719926Island text2.145522.286921.4582Neighbours11IslandViewer 1916602.gbk
102202690*223230229613Island text3.1287728.64342.3475Neighbours11BLASTN+IslandViewer 2202690.gbk
112466360251915552796Island text2.5354427.536838.23Neighbours11BLASTN+IslandViewer 2466360.gbk
122739984276222422241Island text2.0257322.808231.2827Neighbours11BLASTN2739984.gbk
132833317285648223166Island text2.8086830.154639.1023Neighbours11BLASTN+IslandViewer 2833317.gbk
142914000*293681522816Island text1.8848123.413223.992Neighbours11BLASTN2914000.gbk
152983555300209918545Island text1.5323124.252223.4895Neighbours11BLASTN+IslandViewer 2983555.gbk
163072817*309809925283Island text2.6733431.576427.8195Neighbours11BLASTNIslandViewer 3072817.gbk
173363500*338699623497Island text2.6038126.701430.8609Neighbours11BLASTNIslandViewer 3363500.gbk