Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011899: Halothermothrix orenii H 168, complete genome

NCBI: NC_011899

Host Lineage: Halothermothrix orenii; Halothermothrix; Halanaerobiaceae; Halanaerobiales; Firmicutes; Bacteria

General Information: Thermophillic halophile. Halothermothrix orenii H 168 was isolated from the sediment of a salt lake in Tunisia. This organism is a member of a group of anaerobic halophilic bacteria related to the Clostridia. This organism is a thermophile and therefore is able to grow in hot anaerobic saline environments.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112699*3674224044Island text2.6958738.013645.1788Neighbours21BLASTN+IslandViewer 12699.gbk
286800*11300826209Island text2.0413434.132643.7162Neighbours21BLASTN+86800.gbk
3124500*14268218183Island text1.5631326.613242.3316Neighbours377BLASTN124500.gbk
4355638*38049824861Island text2.4825528.92839.7496Neighbours21BLASTN+355638.gbk
543729845887021573Island text1.6077926.857436.6549Neighbours21BLASTN+437298.gbk
6948790*96756618777Island text1.9175526.507844.5548Neighbours21BLASTN948790.gbk
71021672104488823217Island text2.7803228.415232.5338Neighbours21BLASTN+1021672.gbk
81437981146567227692Island text3.1890427.307627.9178Neighbours21BLASTNIslandViewer 1437981.gbk
91603500162928825789Island text3.606626.695526.1655Neighbours21+1603500.gbk
101807365183055023186Island text2.9980327.158329.6443Neighbours21BLASTN1807365.gbk
111926000194927823279Island text1.461327.535344.4817Neighbours21BLASTN+1926000.gbk
121969187199449925313Island text2.7214825.738727.9815Neighbours21+1969187.gbk
132165814218917023357Island text1.8664828.132329.3932Neighbours21BLASTN2165814.gbk
142286884*231116224279Island text2.0244533.217249.31Neighbours22BLASTN2286884.gbk
152481229250487523647Island text4.095328.168718.9043Neighbours21BLASTNIslandViewer 2481229.gbk