Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011894: Methylobacterium nodulans ORS 2060, complete genome

NCBI: NC_011894

Host Lineage: Methylobacterium nodulans; Methylobacterium; Methylobacteriaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Methylobacterium nodulans was isolated from root nodules from the legume Crotalaria, a large Fabaceae group found in Africa. Methylobacterium nodulans fixes nitrogen and can grow with C1 compounds, such as methanol and formate, as a sole carbon source.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
17928211536336082Island text3.7165425.336814.4806Neighbours11BLASTN+IslandViewer 79282.gbk
2200928*22402523098Island text2.7854219.524321.0903Neighbours11BLASTN+200928.gbk
358563762859942963Island text2.5614820.5822.6549Neighbours11BLASTN+IslandViewer 585637.gbk
467227069179519526Island text2.1445317.410416.8778Neighbours11BLASTN+IslandViewer 672270.gbk
590163092409922470Island text1.5149817.345613.6131Neighbours11BLASTNIslandViewer 901630.gbk
695789798052222626Island text1.8317916.445819.57Neighbours11BLASTN+957897.gbk
7983572101559932028Island text1.8853817.25217.5653Neighbours11BLASTN+IslandViewer 983572.gbk
81499229*152597926751Island text2.5412320.753311.4892Neighbours11BLASTN+IslandViewer 1499229.gbk
92125474214409918626Island text1.5924517.015213.808Neighbours11BLASTN+IslandViewer 2125474.gbk
102184956*220848223527Island text2.3837618.897917.2006Neighbours11BLASTNIslandViewer 2184956.gbk
112359128238121922092Island text1.9337916.71818.498Neighbours11BLASTN+IslandViewer 2359128.gbk
122385834240459918766Island text1.8750516.973212.399Neighbours11BLASTN+IslandViewer 2385834.gbk
132503639252209918461Island text2.2748617.242217.6544Neighbours11BLASTNIslandViewer 2503639.gbk
142549076256810819033Island text1.6741717.373911.6366Neighbours11BLASTNIslandViewer 2549076.gbk
152618951266308244132Island text2.2264918.33420.4883Neighbours11BLASTN+IslandViewer 2618951.gbk
162747491*277359926109Island text1.6215416.9215.4708Neighbours11BLASTN+IslandViewer 2747491.gbk
172811573*283498323411Island text3.2017821.670315.33Neighbours11BLASTN+IslandViewer 2811573.gbk
183029964307745447491Island text2.0429518.133416.8263Neighbours11BLASTN+IslandViewer 3029964.gbk
193090000310978319784Island text2.0449317.36236.83396Neighbours11BLASTN+IslandViewer 3090000.gbk
203161289320428142993Island text1.688920.021520.099Neighbours11BLASTN+IslandViewer 3161289.gbk
213268850331029441445Island text1.7876717.987919.3873Neighbours11BLASTN+IslandViewer 3268850.gbk
223319856336109941244Island text2.3244320.086816.5578Neighbours11BLASTN+IslandViewer 3319856.gbk
233475775349467518901Island text2.2164316.46417.1885Neighbours11BLASTNIslandViewer 3475775.gbk
243578500359609917600Island text1.9340816.895716.5124Neighbours11BLASTNIslandViewer 3578500.gbk
253623500365118127682Island text2.6370916.087119.3994Neighbours11BLASTN+IslandViewer 3623500.gbk
263671162369484723686Island text1.545517.801612.5716Neighbours11BLASTN+3671162.gbk
273797500*381610118602Island text2.5491417.590317.4463Neighbours11BLASTN3797500.gbk
283820000*384954329544Island text2.3261616.470116.2078Neighbours11BLASTN+3820000.gbk
293885490390812022631Island text2.3617119.83811.7347Neighbours11BLASTNIslandViewer 3885490.gbk
303988500*401357725078Island text2.7234320.292212.1783NeighboursBLASTN+IslandViewer 3988500.gbk
314013830405852444695Island text1.8380618.633218.7716Neighbours11BLASTN+IslandViewer 4013830.gbk
324066926411059943674Island text2.5292419.414116.9164Neighbours11BLASTN+IslandViewer 4066926.gbk
334360577439709936523Island text2.662621.338117.0278Neighbours11BLASTN+IslandViewer 4360577.gbk
344911500*493054819049Island text2.5001617.514315.2516Neighbours11BLASTNIslandViewer 4911500.gbk
354934304495609921796Island text1.7184416.790318.2445Neighbours11BLASTN+4934304.gbk
365056901510729350393Island text2.2653318.958715.3099Neighbours11BLASTN+IslandViewer 5056901.gbk
375468500549819029691Island text2.3710820.437617.2944Neighbours11BLASTNIslandViewer 5468500.gbk
385751417577424522829Island text1.6702617.557616.0015Neighbours11BLASTN+IslandViewer 5751417.gbk
395787990583359945610Island text2.2403818.835213.277Neighbours11BLASTN+5787990.gbk
406001144*602029319150Island text1.9974816.84116.3784Neighbours11BLASTN6001144.gbk
416220791624209921309Island text1.6197517.895820.8491Neighbours11BLASTN+IslandViewer 6220791.gbk
426259649628391924271Island text1.5472116.877417.8584Neighbours11BLASTN+IslandViewer 6259649.gbk
436295807631464118835Island text1.4715318.263616.893Neighbours11BLASTN+IslandViewer 6295807.gbk
446382636641559932964Island text3.1764120.972319.3535Neighbours11BLASTN+IslandViewer 6382636.gbk
456418000*644309925100Island text5.1265529.879222.9223Neighbours11BLASTN+IslandViewer 6418000.gbk
466485500*650309917600Island text1.7557516.5439.42258Neighbours11BLASTN+IslandViewer 6485500.gbk
476516856654688430029Island text2.3412522.220114.3572Neighbours11BLASTN+IslandViewer 6516856.gbk
486708970672882019851Island text1.9057217.208826.1522Neighbours11BLASTNIslandViewer 6708970.gbk
496731115675281021696Island text1.8921917.418817.112Neighbours11BLASTN+IslandViewer 6731115.gbk
506793497*681727123775Island text3.5252319.318219.5621Neighbours11BLASTN6793497.gbk
516888562*695715868597Island text2.3971319.414218.5306Neighbours11BLASTN+IslandViewer 6888562.gbk
527035285705982324539Island text2.2833817.18149.9464Neighbours11BLASTN+IslandViewer 7035285.gbk
537109374713217722804Island text2.1466416.834917.0545Neighbours11BLASTNIslandViewer 7109374.gbk
547421867*744558723721Island text1.5238717.424617.7975Neighbours11BLASTN+7421867.gbk
557563668*760232338656Island text3.7962126.364517.8313Neighbours11BLASTN+IslandViewer 7563668.gbk
567702000773211530116Island text1.8695517.183815.4384Neighbours11BLASTN+IslandViewer 7702000.gbk