Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011891: Anaeromyxobacter dehalogenans 2CP-1, complete genome

NCBI: NC_011891

Host Lineage: Anaeromyxobacter dehalogenans; Anaeromyxobacter; Myxococcaceae; Myxococcales; Proteobacteria; Bacteria

General Information: This strain (2CP-1; ATCC BAA-258) is the type strain for the species and was isolated from stream sediment near Lansing, Mich., USA. This anaerobic species was originally isolated by enrichment and isolation of single plate-grown colonies, and was the first pure culture of myxobacteria able to grow anaerobically. The unique physiological characteristics of this organism include the ability to use ortho-substituted mono- and dichlorinated phenols, nitrate, H2 and fumarate as terminal electron acceptors.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
117940*4071722778Island text2.3123314.30639.40364Neighbours11BLASTN+IslandViewer 17940.gbk
2315182*33809922918Island text1.5290515.460813.0284Neighbours11BLASTN+315182.gbk
31225000125480929810Island text2.613215.443114.4293Neighbours11BLASTN+IslandViewer 1225000.gbk
41278199130109922901Island text1.6965812.172715.7718Neighbours11BLASTN1278199.gbk
51437335145961322279Island text2.1803313.14458.24172Neighbours11BLASTN+IslandViewer 1437335.gbk
62088134211256324430Island text1.3412313.095812.4985Neighbours8BLASTN2088134.gbk
72264853*228864223790Island text1.5537516.262426.3426Neighbours11BLASTN2264853.gbk
82607812*263605028239Island text1.727517.133726.5632Neighbours11BLASTN2607812.gbk
92800000281959919600Island text2.2745912.00518.87178Neighbours11BLASTN+IslandViewer 2800000.gbk
103004000*302304519046Island text1.4969315.993828.1317Neighbours11BLASTN3004000.gbk
113369170339359924430Island text3.0774716.631816.9535Neighbours11BLASTN+IslandViewer 3369170.gbk
124104000412750023501Island text2.597512.536511.865Neighbours11BLASTN+IslandViewer 4104000.gbk
134169796419229622501Island text2.0229912.138317.5052Neighbours11BLASTN+IslandViewer 4169796.gbk
144450031*448061130581Island text4.3570819.339414.6478Neighbours11BLASTN+IslandViewer 4450031.gbk
154931961494959917639Island text1.9637812.113914.7947Neighbours11BLASTNIslandViewer 4931961.gbk