Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011886: Arthrobacter chlorophenolicus A6, complete genome

NCBI: NC_011886

Host Lineage: Arthrobacter chlorophenolicus; Arthrobacter; Micrococcaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Arthrobacter chlorophenolicus A6 (DSM 12829) was isolated from soil at Fort Collins, Colorado, USA and is able to use 4-chlorophenol as a sole source of carbon and energy. This organism can degrade 4-chlorophenol in soil at temperatures ranging from 5 to 28 degrees C making it a good candidate for bioremediation. Arthrobacter chlorophenolicus can degrade high concentrations of para-substituted phenols, such as 4-chlorophenol and 4-nitrophenol and can survive under harsh conditions, such as cold temperature and during starvation in soil.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
117703920120524167Island text2.0683720.776817.2975Neighbours11BLASTNIslandViewer 177039.gbk
240466142708122421Island text1.5526119.300822.0307Neighbours11BLASTN+IslandViewer 404661.gbk
31035500105415618657Island text1.7234216.672720.2187Neighbours11BLASTN+IslandViewer 1035500.gbk
41176238120876232525Island text2.2405619.565118.0592Neighbours11BLASTNIslandViewer 1176238.gbk
51891077*192459933523Island text1.9407616.866419.5608Neighbours11BLASTN+IslandViewer 1891077.gbk
62097349211562818280Island text1.8734616.907820.0085Neighbours11BLASTN+2097349.gbk
72369980239433024351Island text1.425321.11522.0794Neighbours11BLASTN+2369980.gbk
82696671271597719307Island text1.6966417.288824.2082Neighbours11BLASTN2696671.gbk
92950411*298659936189Island text2.3181722.900524.4647Neighbours11BLASTNIslandViewer 2950411.gbk
103274048330115727110Island text1.7839116.220820.4349Neighbours11BLASTNIslandViewer 3274048.gbk
113903343392368820346Island text1.5550817.60418.3396Neighbours11+3903343.gbk
124336417436804431628Island text2.4041321.571322.8003Neighbours11BLASTN+IslandViewer 4336417.gbk
134376261*440799931739Island text2.272924.037425.7717Neighbours11BLASTN4376261.gbk