Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011884: Cyanothece sp. PCC 7425, complete genome

NCBI: NC_011884

Host Lineage: Cyanothece; Cyanothece; ; Chroococcales; Cyanobacteria; Bacteria

General Information: Cyanothece sp. PCC 7425 was isolated from a rice field in Senegal. Unlike some other Cyanothece strains, Cyanothece 7425 appears to be an obligate autotroph. Cyanothece may prove very important in biological hydrogen production, as it is missing the uptake hydrogenase enzyme.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
131583933987024032Island text1.5377430.001423.1849Neighbours311BLASTN315839.gbk
239332841609922772Island text1.8847431.127922.1027Neighbours311BLASTN+IslandViewer 393328.gbk
3732000*75459122592Island text1.4603530.240823.3341Neighbours311BLASTN732000.gbk
483190585773325829Island text1.8406632.89224.2021Neighbours311BLASTN+831905.gbk
51029328105377624449Island text1.4418431.511417.4625Neighbours311BLASTN+IslandViewer 1029328.gbk
61413831143422620396Island text1.4642432.155926.343Neighbours311BLASTN+IslandViewer 1413831.gbk
71541256*157031329058Island text1.4798828.543125.5469Neighbours311BLASTN+1541256.gbk
81591430161462423195Island text1.4221627.693323.1575Neighbours311+1591430.gbk
91665888168716421277Island text1.6776631.16419.6892Neighbours311BLASTNIslandViewer 1665888.gbk
101821862184406822207Island text1.5800526.691216.6403Neighbours311BLASTN+1821862.gbk
111898702191931720616Island text1.5221428.447222.5667Neighbours311BLASTN+IslandViewer 1898702.gbk
121998559202359925041Island text1.9557933.083324.7736Neighbours311BLASTNIslandViewer 1998559.gbk
132051723208221330491Island text1.4699429.006834.7375Neighbours21BLASTN+IslandViewer 2051723.gbk
142194767221916724401Island text2.0357138.220721.3682Neighbours311BLASTN+IslandViewer 2194767.gbk
152397248241814720900Island text1.4746527.401517.9985Neighbours311BLASTN+IslandViewer 2397248.gbk
162422000244595523956Island text2.0980637.487819.0485Neighbours311BLASTN+IslandViewer 2422000.gbk
172551715*258006028346Island text1.8686340.775924.8142Neighbours311BLASTN+IslandViewer 2551715.gbk
182584791260874223952Island text1.7383731.624925.9505Neighbours311BLASTNIslandViewer 2584791.gbk
192817054286467347620Island text1.5968829.064119.837Neighbours311BLASTN+2817054.gbk
202921618294607124454Island text1.4703930.508325.6974Neighbours311BLASTN+IslandViewer 2921618.gbk
213099488312838128894Island text1.786932.293928.0984Neighbours311BLASTNIslandViewer 3099488.gbk
223302500333155629057Island text2.5885636.531719.8294Neighbours311BLASTN+IslandViewer 3302500.gbk
233393500341431820819Island text1.819629.551520.4384Neighbours311BLASTN+IslandViewer 3393500.gbk
243648561*366725818698Island text1.6020327.885923.0661Neighbours311BLASTN+IslandViewer 3648561.gbk
253881568390709925532Island text2.0699731.41223.2334Neighbours311BLASTN3881568.gbk
264366831439475127921Island text2.4281839.950523.0069Neighbours311BLASTNIslandViewer 4366831.gbk
275019500*505991140412Island text2.7520737.034720.3931Neighbours311BLASTN+IslandViewer 5019500.gbk