Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011880: Cyanothece sp. PCC 7425 plasmid pP742501, complete sequence

NCBI: NC_011880

Host Lineage: Cyanothece; Cyanothece; ; Chroococcales; Cyanobacteria; Bacteria

General Information: Cyanothece sp. PCC 7425 was isolated from a rice field in Senegal. Unlike some other Cyanothece strains, Cyanothece 7425 appears to be an obligate autotroph. Cyanothece may prove very important in biological hydrogen production, as it is missing the uptake hydrogenase enzyme.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1565437780621264Island text1.771231.930924.863Neighbours311BLASTN56543.gbk