Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011837: Clostridium kluyveri NBRC 12016, complete genome

NCBI: NC_011837

Host Lineage: Clostridium kluyveri; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: Involved in production of caproic acid in co-culture with a methanogen. Clostridium kluyveri was enriched from mud in a co-culture with Methanobacterium omelianskii. When grown on ethanol C. kluyveri produce caproic acid in addition to acetic acid. This organism is able to grow anaerobically on ethanol and acetate as sole energy sources.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*1866018660Island text5.1423227.667553.3089Neighbours21BLASTN1.gbk
2560007809922100Island text1.7542524.793328.8768Neighbours21BLASTNIslandViewer 56000.gbk
3165913*18847822566Island text3.9763926.378746.4551Neighbours21BLASTN165913.gbk
423816027486436705Island text2.8909740.645533.3242Neighbours32BLASTNIslandViewer 238160.gbk
583043686280432369Island text3.9206825.628546.6605Neighbours21BLASTN830436.gbk
6950000*98503435035Island text3.8544228.039347.2815Neighbours21BLASTN950000.gbk
71056888108023123344Island text1.7710621.972341.3631Neighbours21BLASTN1056888.gbk
81935294195609920806Island text2.2325725.11441.4745Neighbours211935294.gbk
91969144199159922456Island text3.8622525.380744.0492Neighbours21BLASTN1969144.gbk
102567691259235324663Island text1.825923.373713.7715Neighbours21BLASTNIslandViewer 2567691.gbk
112605409263940733999Island text2.0824324.802421.0683Neighbours21BLASTNIslandViewer 2605409.gbk
122856500287872222223Island text2.3663830.914528.2087Neighbours21BLASTNIslandViewer 2856500.gbk
133052000307453622537Island text2.0640524.167137.7939Neighbours21BLASTN3052000.gbk
143226500326325136752Island text2.2837224.316639.7241Neighbours21BLASTNIslandViewer 3226500.gbk
153272752329620023449Island text3.9674225.009146.6683Neighbours21BLASTN3272752.gbk
163776541379898422444Island text3.8275927.88445.2757Neighbours344BLASTN3776541.gbk
173814000*388259968600Island text3.3535443.19327.9901Neighbours23BLASTNIslandViewer 3814000.gbk