Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011832: Candidatus Methanosphaerula palustris E1-9c, complete genome

NCBI: NC_011832

Host Lineage: Methanosphaerula palustris; Methanosphaerula; Methanoregulaceae; Methanomicrobiales; Euryarchaeota; Archaea

General Information: Candidatus Methanosphaerula palustris was isolated from an organically rich wetland in central New York State, USA. This methanogen is highly sensitive to the concentration of sulfur in the soil. Wetlands methanogenic bacterium.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
136609240070134610Island text3.1783950.480320.2676NeighboursBLASTNIslandViewer 366092.gbk
261987464334523472Island text2.0530842.83527.6231Neighbours38BLASTN+IslandViewer 619874.gbk
382065889687976222Island text1.9443341.276125.5355Neighbours38BLASTN820658.gbk
491399496539651403Island text2.2172642.58622.2065Neighbours38BLASTNIslandViewer 913994.gbk
51122268114766625399Island text1.8167639.398835.7607Neighbours38BLASTN1122268.gbk
61148859118179932941Island text1.8319239.049526.2231Neighbours38BLASTN+1148859.gbk
71283521131090227382Island text1.9520640.218327.3694Neighbours38BLASTN+IslandViewer 1283521.gbk
81399446143307733632Island text2.199841.570519.6843Neighbours38BLASTN+IslandViewer 1399446.gbk
91535740155884623107Island text1.5177236.360214.4825Neighbours38BLASTN+IslandViewer 1535740.gbk
101949717197267422958Island text1.5948935.809824.4366Neighbours38BLASTN+IslandViewer 1949717.gbk
112306341*234048734147Island text2.1144344.19622.9271Neighbours38BLASTN+IslandViewer 2306341.gbk
122527183*254954922367Island text1.8235936.602937.2883Neighbours38BLASTN2527183.gbk
132668337*269476226426Island text3.3720848.612520.1461Neighbours38BLASTN+2668337.gbk
142760000*278338023381Island text1.5408638.138424.0955Neighbours38BLASTN2760000.gbk