Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011831: Chloroflexus aggregans DSM 9485, complete genome

NCBI: NC_011831

Host Lineage: Chloroflexus aggregans; Chloroflexus; Chloroflexaceae; Chloroflexales; Chloroflexi; Bacteria

General Information: This organism is a thermophilic, filamentous, phototroph first isolated from a hot spring in Japan. Chloroflexus aggregans contains chlorosomes with bacteriochlorophyll a and c as the main photosynthetic pigments. This organism has active gliding mobility and forms mat-like aggregates in liquid media.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
154718157605528875Island text2.0033142.744142.5153Neighbours59BLASTNIslandViewer 547181.gbk
2787788*81012822341Island text1.5195727.784546.4186Neighbours11BLASTN787788.gbk
385343387601022578Island text1.6668731.125427.1166Neighbours11BLASTN853433.gbk
41336779*136375426976Island text2.4545341.941732.3099Neighbours59BLASTN+IslandViewer 1336779.gbk
51610346164034930004Island text2.9645950.118130.6851610346.gbk
61693935171520721273Island text1.638140.47125.804Neighbours59BLASTN+IslandViewer 1693935.gbk
71969792199276122970Island text1.5903227.371154.3672Neighbours59BLASTN1969792.gbk
82213306223739124086Island text1.7602529.659427.4851Neighbours11BLASTN2213306.gbk
92410607244905338447Island text2.9224345.294128.5595Neighbours55BLASTNIslandViewer 2410607.gbk
102728932275470425773Island text1.9129539.155927.9937Neighbours55BLASTNIslandViewer 2728932.gbk
112795819*282176325945Island text2.5346941.418830.4572Neighbours59BLASTN+IslandViewer 2795819.gbk
124043802406237618575Island text1.504439.083837.2Neighbours11BLASTNIslandViewer 4043802.gbk