Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011772: Bacillus cereus G9842, complete genome

NCBI: NC_011772

Host Lineage: Bacillus cereus; Bacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: This strain was isolated from stool samples from an outbreak that involved three individuals in Nebraska, USA 1996. This organism is a soil-dwelling opportunistic pathogen that causes food poisoning in infected individuals. The rapid onset is characterized by nausea and vomiting while the late onset is characterized by diarrhea and abdominal pain. The emetic disease is caused by a small stable dodecadepsipeptide cerulide whereas the diarrheal disease is caused by a heat labile enterotoxin. Some strains produce a potent cytotoxin that forms a pore in the membrane of eukaryotic cells and causes necrotic enteritis (death of intestinal epithelial cells) while the unique tripartite membrane lytic toxin hemolysin BL contributes to the diarrheal disease and destructive infections of the eye.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1323050*34387520826Island text1.7356524.26834.9525Neighbours21BLASTN+323050.gbk
264777866815320376Island text1.5849224.6234.2563Neighbours21BLASTN+647778.gbk
31011220*103272721508Island text1.8453526.065736.0641Neighbours21BLASTN+1011220.gbk
41094534111900124468Island text1.5456325.340535.254Neighbours21BLASTN1094534.gbk
51329730135055220823Island text1.8318624.744636.3605Neighbours21BLASTN1329730.gbk
61575674159903823365Island text2.1132123.352144.1531Neighbours21BLASTN+IslandViewer 1575674.gbk
71684404170841224009Island text1.511222.750537.3005Neighbours21BLASTN+1684404.gbk
82166000218832022321Island text1.5902625.498538.9268Neighbours21BLASTN+2166000.gbk
92305000*233293027931Island text1.5773823.671635.8144Neighbours21BLASTN2305000.gbk
102495972251811522144Island text1.8724823.774934.9373Neighbours21BLASTN+2495972.gbk
112763863279020926347Island text1.7273626.167136.9486Neighbours21BLASTN+IslandViewer 2763863.gbk
122860000288291022911Island text1.5682123.905635.3697Neighbours21BLASTN+2860000.gbk
133259483*328245822976Island text1.6610929.126644.4147Neighbours21BLASTN+3259483.gbk
143705878*372883622959Island text1.5087425.808634.0906Neighbours21BLASTN+3705878.gbk
153749399376960320205Island text1.486424.39228.7794Neighbours21BLASTN+IslandViewer 3749399.gbk
163787500*381637528876Island text1.6391925.198632.3214Neighbours21BLASTN3787500.gbk
173821917*384006218146Island text1.808223.875233.3232Neighbours21BLASTN3821917.gbk
183863166*389031427149Island text1.8425226.405935.3447Neighbours21BLASTN3863166.gbk
193896635391470718073Island text1.4937824.720338.47Neighbours21BLASTN3896635.gbk
204125996414521919224Island text1.569423.919830.9843Neighbours21BLASTN4125996.gbk
214255161*427769522535Island text1.5937825.161931.623Neighbours21BLASTN4255161.gbk
224321117*433922618110Island text1.7373224.379932.1842Neighbours21BLASTN4321117.gbk
234397599*441737119773Island text1.6700324.345431.097Neighbours21BLASTN4397599.gbk
244487378*452232234945Island text1.8082423.3833.4421Neighbours21BLASTN+4487378.gbk
254565418*458874523328Island text1.9356721.400834.6327Neighbours21BLASTN+4565418.gbk
264606000*462852922530Island text1.8671123.747645.0603Neighbours21BLASTN4606000.gbk
274638000*466192523926Island text1.6515627.666740.4972Neighbours21BLASTN4638000.gbk
284763542478509921558Island text1.6921924.189432.1964Neighbours21BLASTN+4763542.gbk
294875893491196236070Island text1.6082724.360233.0944Neighbours21BLASTN+4875893.gbk
304994500*501209917600Island text1.4884726.44730.4727Neighbours21BLASTN4994500.gbk
315021404*506359942196Island text1.6358425.385734.8426Neighbours21BLASTN+5021404.gbk
325158680*520959950920Island text1.7137624.281639.3137Neighbours21BLASTN5158680.gbk
335222917*524686823952Island text1.8723123.391939.073Neighbours21BLASTN+5222917.gbk