Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011768: Desulfatibacillum alkenivorans AK-01, complete genome

NCBI: NC_011768

Host Lineage: Desulfatibacillum alkenivorans; Desulfatibacillum; Desulfobacteraceae; Desulfobacterales; Proteobacteria; Bacteria

General Information: Desulfatibacillum alkenivorans AK-01 was isolated from sediment from the Arthur Kill, NJ/NY waterway, USA. This site has a history of contamination from petrochemical industry and strain AK-01 is able to degrade 13 to 18 carbon alkanes. Desulfatibacillum alkenivorans is an alkene-degrading, sulfate-reducing bacterium isolated from estuarine sediment. It activates alkanes via subterminal addition of the alkane to fumarate.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
17929710770728411Island text1.4492327.407623.3098Neighbours33BLASTN+79297.gbk
21718869*178184662978Island text1.9587635.629828.6555Neighbours23BLASTN+IslandViewer 1718869.gbk
31889853*190959819746Island text1.5082130.395822.5971Neighbours33BLASTN+1889853.gbk
43385719*341952833810Island text1.9338137.662322.3752Neighbours32BLASTN+IslandViewer 3385719.gbk
53854455387359919145Island text1.5276427.488713.3086Neighbours33BLASTN3854455.gbk
64571869*459528523417Island text1.8202435.815449.6788Neighbours316BLASTN4571869.gbk
75631288565926727980Island text1.8259835.367519.1863Neighbours33BLASTN+5631288.gbk
85666283569169225410Island text1.7776629.796949.099Neighbours335666283.gbk
95900500*594602245523Island text2.633841.35119.0812Neighbours32BLASTN+IslandViewer 5900500.gbk