Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011766: Desulfurococcus kamchatkensis 1221n chromosome, complete genome

NCBI: NC_011766

Host Lineage: Desulfurococcus kamchatkensis; Desulfurococcus; Desulfurococcaceae; Desulfurococcales; Crenarchaeota; Archaea

General Information: This organism, a hyperthermophilic Crenarchaeota, was isolated from the sediments of Treshchinny Spring (Uzon Caldera, Kamchatka, Russia).



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
175500*10150826009Island text2.0326540.824324.7121Neighbours338BLASTN+IslandViewer 75500.gbk
2275673*30209926427Island text2.0878340.639725.0742Neighbours338BLASTN+275673.gbk
351994654214422199Island text1.6377136.367846.028Neighbours338BLASTN+IslandViewer 519946.gbk
4755000*78143826439Island text1.8529746.439336.4938755000.gbk
51035858*106020224345Island text1.748731.071350.1367Neighbours338BLASTN1035858.gbk
61078001*109842820428Island text1.8431232.271751.2763Neighbours338BLASTN1078001.gbk
71106739*114320836470Island text1.9870441.169929.144Neighbours338BLASTN+1106739.gbk
81255503*127925023748Island text1.8241430.848753.9103Neighbours338BLASTN1255503.gbk