Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011761: Acidithiobacillus ferrooxidans ATCC 23270 chromosome, complete

NCBI: NC_011761

Host Lineage: Acidithiobacillus ferrooxidans; Acidithiobacillus; Acidithiobacillaceae; Acidithiobacillales; Proteobacteria; Bacteria

General Information: This organism was isolated from bituminous coal mine effluent. Acidophilic iron-oxidizing bacterium. Acidithiobacillus ferrooxidans, formerly Thiobacillus ferrooxidans, is an acidophilic iron-oxidizing bacterium that is able to grow at a pH range of 1.3 to 4.0. This organism is often identified in acid mine drainage and as a member of microbial consortia involved in bioleaching. Acidithiobacillus ferrooxidans has been identified as the dominant microorganism in percolation and continuous flow mineral leaching bioreactors.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1292903*31312320221Island text1.526633.941349.0823Neighbours52BLASTN292903.gbk
268496971049525527Island text1.6351426.516939.2374Neighbours54BLASTN+IslandViewer 684969.gbk
3999791102209922309Island text1.7438531.105136.8026Neighbours54BLASTN+IslandViewer 999791.gbk
41155636117888223247Island text1.4673330.040144.6461Neighbours54BLASTNIslandViewer 1155636.gbk
51357799138059922801Island text1.6262729.905538.9981Neighbours11BLASTN+IslandViewer 1357799.gbk
61412420143331420895Island text2.0717134.602732.9164Neighbours54BLASTN+IslandViewer 1412420.gbk
71499500151842118922Island text1.5253329.631827.8597Neighbours54BLASTNIslandViewer 1499500.gbk
81838000*186574227743Island text1.5508326.331532.2573Neighbours54BLASTN+IslandViewer 1838000.gbk
91904637*192892624290Island text3.5165445.652725.1896Neighbours54BLASTN+IslandViewer 1904637.gbk
102031876205617824303Island text1.5623131.01927.0618Neighbours54BLASTN+IslandViewer 2031876.gbk
112067695*209009922405Island text1.8343237.0924.8669Neighbours54BLASTN+2067695.gbk
122131911217610544195Island text1.4925827.711629.7539Neighbours54BLASTN+IslandViewer 2131911.gbk
132217632*224042922798Island text1.6296427.844226.859Neighbours54BLASTN+IslandViewer 2217632.gbk
142344408236901524608Island text1.4436626.969838.9633Neighbours54BLASTNIslandViewer 2344408.gbk
152457560*247982522266Island text1.6284130.105326.2378Neighbours54BLASTN+IslandViewer 2457560.gbk
162546081257041124331Island text1.6048728.810825.2188Neighbours54BLASTN+IslandViewer 2546081.gbk
172641481269145949979Island text1.897333.380128.0042Neighbours54BLASTN+IslandViewer 2641481.gbk
182785660284217656517Island text1.7201630.70432.6872Neighbours54BLASTN+IslandViewer 2785660.gbk