Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011757: Methylobacterium chloromethanicum CM4, complete genome

NCBI: NC_011757

Host Lineage: Methylobacterium extorquens; Methylobacterium; Methylobacteriaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Methylobacterium chloromethanicum was isolated from soil at a petrochemical factory in Tatarstan, Russia. This organism is able to grow using chloromethane as the sole carbon and energy source.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
139881*7409934219Island text2.0994719.03212.1316Neighbours11BLASTN+IslandViewer 39881.gbk
297281*12674229462Island text1.9770719.406217.7968Neighbours11BLASTN+IslandViewer 97281.gbk
321773923612518387Island text1.6727415.944211.8468Neighbours11BLASTN217739.gbk
4276953*30159924647Island text1.687718.012117.272Neighbours11BLASTNIslandViewer 276953.gbk
551700055359936600Island text1.7610418.271615.326Neighbours11BLASTNIslandViewer 517000.gbk
6577611*60454026930Island text2.8804122.013423.7032Neighbours11BLASTN+577611.gbk
7748223*79542247200Island text2.9548722.200223.3689Neighbours11BLASTN+748223.gbk
81067543*108613118589Island text1.7491515.640211.7493Neighbours11BLASTN+IslandViewer 1067543.gbk
91091486111319221707Island text1.7053817.111518.4139Neighbours11BLASTN+IslandViewer 1091486.gbk
101121262114088219621Island text1.6744916.135713.6354Neighbours11BLASTN+IslandViewer 1121262.gbk
111146608*117421827611Island text3.2483524.143121.9329Neighbours11BLASTN1146608.gbk
121246000128589739898Island text1.7096816.574615.8243Neighbours11BLASTN+IslandViewer 1246000.gbk
131288637131159922963Island text2.0394415.9939.56218Neighbours11BLASTNIslandViewer 1288637.gbk
141532047*155075218706Island text1.4976816.026317.2981Neighbours11BLASTN+1532047.gbk
151553500157885725358Island text1.8288620.185218.3644Neighbours11BLASTN+IslandViewer 1553500.gbk
161627698*165391426217Island text3.0966223.122323.7558Neighbours11BLASTNIslandViewer 1627698.gbk
172030631*205063220002Island text1.7288816.181315.9885Neighbours11BLASTN+IslandViewer 2030631.gbk
183486283352762441342Island text2.4963821.960920.5836Neighbours11BLASTN+IslandViewer 3486283.gbk
193540992357834237351Island text1.9655519.090613.2841Neighbours11BLASTN+IslandViewer 3540992.gbk
204030346*406130430959Island text1.5246716.912411.6276Neighbours11BLASTN+IslandViewer 4030346.gbk
214205794422846522672Island text1.7817816.833416.6058Neighbours11BLASTN+IslandViewer 4205794.gbk
224293000*433809945100Island text2.5311224.086419.1025Neighbours11BLASTN+IslandViewer 4293000.gbk
234445343447709931757Island text2.2428818.917515.942Neighbours11BLASTNIslandViewer 4445343.gbk
245048714*509121342500Island text1.9653316.386913.4839Neighbours11BLASTN+IslandViewer 5048714.gbk
255102732513806935338Island text2.0590820.310716.6855Neighbours11BLASTN+IslandViewer 5102732.gbk
265693584*571331619733Island text1.5128518.616215.5957NeighboursBLASTN+IslandViewer 5693584.gbk
275742290*578349941210Island text1.6462816.923114.984Neighbours11BLASTN+IslandViewer 5742290.gbk