Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_011753: Vibrio splendidus LGP32 chromosome 1, complete genome

NCBI: NC_011753

Host Lineage: Vibrio splendidus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio splendidus LGP32 (CIP 107715) caused significant mortalities in oysters, Crassostrea gigas, during the summer of 2001. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This microbe inflicts disease and death in many marine species causing massive damage to industries devoted to their production, including fish, oysters, mussels, and scallops.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
120617823311626939Island text3.7394129.767921.6326Neighbours21BLASTN+IslandViewer 206178.gbk
21501868152688725020Island text2.9024430.111322.4304Neighbours21BLASTN+1501868.gbk
31680738170074920012Island text1.5401227.334631.5142Neighbours21BLASTN+IslandViewer 1680738.gbk
42018500203623417735Island text1.5494425.528925.3441Neighbours21BLASTN+IslandViewer 2018500.gbk
53088952*311106322112Island text1.5890227.910244.3304Neighbours42BLASTN+3088952.gbk