Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011741: Escherichia coli IAI1 chromosome, complete genome

NCBI: NC_011741

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Isolated from the faeces of a young healthy military conscript in the 1980s in France. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111381*3595024570Island text2.4853634.73232.4552Neighbours51BLASTN11381.gbk
2145276*16477719502Island text1.6042529.985429.8148Neighbours41BLASTN+IslandViewer 145276.gbk
325693227863921708Island text1.5651934.595625.0622Neighbours51BLASTN+IslandViewer 256932.gbk
41232510*125609923590Island text2.5387933.829315.9946Neighbours41BLASTN+IslandViewer 1232510.gbk
51579375160831928945Island text2.0361231.501421.5779Neighbours41BLASTN+IslandViewer 1579375.gbk
61625535164926623732Island text1.6271629.401825.6913Neighbours41BLASTN+1625535.gbk
71668842169164522804Island text1.7751135.94826.1234Neighbours41BLASTN+IslandViewer 1668842.gbk
81978500*201443135932Island text3.5768139.818418.9074Neighbours41BLASTN+IslandViewer 1978500.gbk
92091249*211444123193Island text1.4721129.65121.8662Neighbours41BLASTN2091249.gbk
102155947218736531419Island text4.5916243.030323.7883Neighbours41BLASTN+IslandViewer 2155947.gbk
112239637*226345123815Island text1.4769430.404931.234Neighbours41BLASTN+IslandViewer 2239637.gbk
122513000253520022201Island text2.1394331.449519.9622Neighbours41BLASTN+IslandViewer 2513000.gbk
132715246*274020524960Island text1.4754432.058630.9538Neighbours41BLASTN+IslandViewer 2715246.gbk
142818750*284490226153Island text1.4336937.110952.6739Neighbours41BLASTN+IslandViewer 2818750.gbk
153030324306823137908Island text2.6802236.805525.1481Neighbours41BLASTN+IslandViewer 3030324.gbk
163263248328331520068Island text5.2418643.344818.0281Neighbours41BLASTN+IslandViewer 3263248.gbk
173344746336309918354Island text2.3463531.107123.9932Neighbours41BLASTN+3344746.gbk
183709081373009921019Island text1.8492629.948928.554Neighbours41BLASTN+3709081.gbk
193862935*388577322839Island text2.2991431.541115.6414Neighbours41BLASTNIslandViewer 3862935.gbk
204395156441536720212Island text2.5738935.974514.2849Neighbours41BLASTN+4395156.gbk
214570498*461509944602Island text1.4155338.065454.7996Neighbours41BLASTN+IslandViewer 4570498.gbk