Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011740: Escherichia fergusonii ATCC 35469, complete genome

NCBI: NC_011740

Host Lineage: Escherichia fergusonii; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Escherichia fergusonii ATCC 35469 was isolated from human feces. Escherichia fergusonii is a member of normal gastrointestinal flora, however, it has been isolated from cases of wound and urinary tract infections.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1165363*18914823786Island text1.4599129.18924.595Neighbours41BLASTN+165363.gbk
2448000*47065722658Island text1.7977829.359225.271Neighbours41BLASTN+IslandViewer 448000.gbk
362140864031618909Island text2.3171129.199120.9709Neighbours41BLASTN+IslandViewer 621408.gbk
481041182957319163Island text1.517930.544721.2612Neighbours41BLASTN+IslandViewer 810411.gbk
51189455*121259923145Island text2.159131.559123.221Neighbours41BLASTN1189455.gbk
61494796152042525630Island text2.6539534.949122.0682Neighbours41BLASTN+IslandViewer 1494796.gbk
71595381161679021410Island text2.4698631.658918.7025Neighbours41BLASTN+1595381.gbk
81831845185021818374Island text1.521628.556726.8851Neighbours41BLASTN+1831845.gbk
91991941*201386221922Island text1.7183427.775424.126Neighbours41BLASTN+IslandViewer 1991941.gbk
102072173211413741965Island text2.0898531.035129.0227Neighbours41BLASTN+IslandViewer 2072173.gbk
112135141215307917939Island text1.9648829.568626.9518Neighbours21BLASTNIslandViewer 2135141.gbk
122220251*224611525865Island text1.9644431.925423.3661Neighbours41BLASTN+2220251.gbk
132737467275914021674Island text1.9765830.207822.0967Neighbours41BLASTN+IslandViewer 2737467.gbk
142769961278959919639Island text1.5010229.197137.534Neighbours41BLASTN+IslandViewer 2769961.gbk
152859933288499725065Island text2.2834934.960418.9996Neighbours41BLASTN+IslandViewer 2859933.gbk
162986514300959323080Island text2.3525332.884222.3616Neighbours41BLASTN2986514.gbk
173453455348056527111Island text2.2287434.578323.2468Neighbours41BLASTN+IslandViewer 3453455.gbk
183739395376209922705Island text1.3704129.249824.1991Neighbours41BLASTN3739395.gbk
194007000*403180124802Island text2.6794234.484414.1913Neighbours41BLASTN+IslandViewer 4007000.gbk
204520373454479624424Island text1.8300930.815623.6308Neighbours41BLASTN+IslandViewer 4520373.gbk