Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_011737: Cyanothece sp. PCC 7424 plasmid pP742402, complete sequence

NCBI: NC_011737

Host Lineage: Cyanothece; Cyanothece; ; Chroococcales; Cyanobacteria; Bacteria

General Information: This strain was isolated from a rice field in Senegal. The genome shows that these cells have the ability to store the products of both photosynthesis (glycogen) and nitrogen fixation (cyanophycin) as intracellular inclusion bodies. Unlike some other Cyanothece strains, Cyanothece 7424 appears to be an obligate autotroph.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1657128831622605Island text1.5186523.206540.8881Neighbours32965712.gbk
210261512662924015Island text1.5139124.647428.085Neighbours329BLASTN102615.gbk