Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011729: Cyanothece sp. PCC 7424 chromosome, complete genome

NCBI: NC_011729

Host Lineage: Cyanothece; Cyanothece; ; Chroococcales; Cyanobacteria; Bacteria

General Information: This strain was isolated from a rice field in Senegal. The genome shows that these cells have the ability to store the products of both photosynthesis (glycogen) and nitrogen fixation (cyanophycin) as intracellular inclusion bodies. Unlike some other Cyanothece strains, Cyanothece 7424 appears to be an obligate autotroph.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
143246145140318943Island text1.4758327.188734.517Neighbours329BLASTN432461.gbk
2812594*83609923506Island text2.2305133.153952.1162Neighbours329BLASTN812594.gbk
31496848152037123524Island text2.2507530.329741.8607Neighbours329BLASTN1496848.gbk
41600056*161992119866Island text1.5592524.038237.8633Neighbours329BLASTN1600056.gbk
52732163275359921437Island text1.4822421.291333.3719Neighbours329+IslandViewer 2732163.gbk
63955310*397890023591Island text2.2659231.509845.6436Neighbours329BLASTN3955310.gbk
74073761*409559921839Island text1.6283934.025432.6319Neighbours329BLASTN4073761.gbk
84127184*415009922916Island text2.0944533.316641.944Neighbours329BLASTN+4127184.gbk
94591500*460990118402Island text1.4987922.10633.7252Neighbours329+4591500.gbk