Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011728: Borrelia burgdorferi ZS7, complete genome

NCBI: NC_011728

Host Lineage: Borrelia burgdorferi; Borrelia; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: This organism is the causative agent of Lyme disease, a multisystemic disease that is considered to be the most prevalent tick-born disease in North America and Europe. This organism was isolated from Ixodes scapularis in 1982. The bacterium is a microaerophilic spirochete that contains seven periplasmic flagella per cell end.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
126985330220732355Island text1.5186616.129629.5956Neighbours21BLASTN269853.gbk
2376375*40449828124Island text1.9500414.752628.0607Neighbours21BLASTN+376375.gbk
3477439*50494327505Island text1.5153918.113635.0048Neighbours21BLASTN+477439.gbk
4832073*85492722855Island text1.5623315.256230.3173Neighbours21BLASTN832073.gbk