Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011726: Cyanothece sp. PCC 8801, complete genome

NCBI: NC_011726

Host Lineage: Cyanothece; Cyanothece; ; Chroococcales; Cyanobacteria; Bacteria

General Information: This strain was isolated from rice fields in Taiwan. Photosynthesis. The cells contain in, addition to chlorophyll and phycobilins, phycoerythrin, a pigment that allows the absorption of light from parts of the spectrum not utilized by many other of photosynthetic organisms.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1213956*24034026385Island text1.6354430.1737.2321Neighbours329BLASTN213956.gbk
21023690104700823319Island text1.4528330.435343.1599Neighbours329BLASTN1023690.gbk
31456585*147992023336Island text1.7693325.753339.9884Neighbours21BLASTN+1456585.gbk
41605600*162524019641Island text1.4972721.479833.9505Neighbours21BLASTN1605600.gbk
51665315168367418360Island text1.4711221.826432.4095Neighbours21BLASTN1665315.gbk
61827000*184927822279Island text1.6969331.146632.7671Neighbours329BLASTN+1827000.gbk
71911500193401122512Island text1.7217228.996228.2373Neighbours329BLASTN1911500.gbk
82793669*281509921431Island text1.6305127.040532.5504Neighbours329BLASTN+2793669.gbk
93051408*307511423707Island text1.8427525.497540.9556Neighbours21BLASTN+IslandViewer 3051408.gbk
103205278*322872323446Island text1.3968328.96434.9921Neighbours21BLASTN3205278.gbk