Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011663: Shewanella baltica OS223 chromosome, complete genome

NCBI: NC_011663

Host Lineage: Shewanella baltica; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. This species is differentiated from other Shewanella spp based on its ability to grow at 4 degrees C but not at 37 degrees C, production of N-acetyl-beta-glucosaminidase, lack of chymotrypsin, and ability to use a variety of complex carbon compounds as carbon and energy sources.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
118088920367622788Island text1.5838532.16856.0726Neighbours21BLASTN+IslandViewer 180889.gbk
267406970276528697Island text2.0036929.35726.8976Neighbours21BLASTN+IslandViewer 674069.gbk
372750075742829929Island text1.7883234.925851.0744Neighbours21BLASTN+IslandViewer 727500.gbk
41159070118209923030Island text1.5022531.085853.4474Neighbours42BLASTN+1159070.gbk
51500772152425723486Island text1.9122328.666123.4742Neighbours42BLASTN+1500772.gbk
61627220165033423115Island text3.9430533.75117.8244Neighbours21BLASTN+IslandViewer 1627220.gbk
71709003174709138089Island text1.5825337.618652.0953Neighbours21BLASTN+IslandViewer 1709003.gbk
81867000*188658319584Island text1.4461430.1825.8497Neighbours42BLASTNIslandViewer 1867000.gbk
92123388214641923032Island text1.3900531.967451.9674Neighbours21BLASTN+IslandViewer 2123388.gbk
102517793253725619464Island text2.2534426.766221.5434Neighbours21BLASTN+2517793.gbk
112568190259072022531Island text3.580534.477326.2814Neighbours21BLASTNIslandViewer 2568190.gbk
122813033283200118969Island text1.8631729.635.5387Neighbours21BLASTN+IslandViewer 2813033.gbk
133181579320474023162Island text1.6132238.478853.7185Neighbours21BLASTN+3181579.gbk
143818886*383871419829Island text1.8943328.626616.2383Neighbours21BLASTN+IslandViewer 3818886.gbk
154579777*460309923323Island text1.8829429.26826.1908Neighbours42BLASTN+4579777.gbk
164943179496914025962Island text1.9945530.173222.6824Neighbours21BLASTN+IslandViewer 4943179.gbk
175016488503935722870Island text1.864228.790728.1155Neighbours21BLASTN+IslandViewer 5016488.gbk