Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011662: Thauera sp. MZ1T, complete genome

NCBI: NC_011662

Host Lineage: Thauera; Thauera; Rhodocyclaceae; Rhodocyclales; Proteobacteria; Bacteria

General Information: Isolation: Marine sediment, Arthur Kill, NJ; Country: USA; Temp: Mesophile; Habitat: Host, Marine. Thauera sp. MZ1T will provide information on the production and regulation of the proteins involved in exopolysaccharide production and the degradation of aromatic compounds.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
114205242052Island text1.8215920.193128.9702Neighbours11BLASTN+IslandViewer 1.gbk
213195615548623531Island text2.4651822.102522.9676Neighbours11BLASTN+IslandViewer 131956.gbk
331783134822530395Island text1.7139119.758619.089Neighbours11BLASTN+IslandViewer 317831.gbk
438616243991353752Island text1.9518523.022919.2038Neighbours11BLASTN+IslandViewer 386162.gbk
5535613*55787622264Island text2.4579321.202423.5291Neighbours11BLASTN+535613.gbk
61017933104515827226Island text1.6102518.512913.9542Neighbours11BLASTN+IslandViewer 1017933.gbk
71041725106095019226Island text1.7530618.427828.9987Neighbours11BLASTN1041725.gbk
81058794107763818845Island text1.5604818.692213.3695Neighbours11BLASTNIslandViewer 1058794.gbk
91160887*119009929213Island text2.1960524.118229.6491Neighbours11BLASTN+IslandViewer 1160887.gbk
101211660123662824969Island text3.2255925.63630.7068Neighbours11BLASTNIslandViewer 1211660.gbk
112320100236647446375Island text3.6701629.388522.6108Neighbours11BLASTN+IslandViewer 2320100.gbk
122374955239350718553Island text1.5591218.82914.8191Neighbours11BLASTN+IslandViewer 2374955.gbk
132402408*242621923812Island text1.9590922.145817.1867Neighbours11BLASTN+IslandViewer 2402408.gbk