Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011653: Thermosipho africanus TCF52B, complete genome

NCBI: NC_011653

Host Lineage: Thermosipho africanus; Thermosipho; Thermotogaceae; Thermotogales; Thermotogae; Bacteria

General Information: This organism was isolated from the Troll oil formation in the North Sea. Thermosipho africanus, a member of the Thermotogales, has the characteristic morphology of one or more cells contained in a sheath-like envelope which extends beyond the cell wall. Preliminary sequencing of Thermotogales genomes has identified extensive horizontal gene transfer between these organisms and the Archaea. Thermosipho africanus has been isolated from marine hydrothermal systems and oil reservoir production waters.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
131000032759917600Island text2.0481916.515724.3026Neighbours21BLASTN310000.gbk
2331986*35451722532Island text1.8984318.112334.2003Neighbours21BLASTN+331986.gbk
3466007*48628720281Island text1.9436517.689233.7027Neighbours21BLASTN466007.gbk
474884477231123468Island text1.7643520.180820.524Neighbours21BLASTN+IslandViewer 748844.gbk
51226035*125859932565Island text3.2352720.409138.8039Neighbours21BLASTN1226035.gbk
61339868*138091441047Island text1.8589716.772630.3204Neighbours21BLASTN1339868.gbk
71463743*148807524333Island text1.725117.135831.8736Neighbours21BLASTN1463743.gbk
81574415*159972725313Island text1.3574917.461128.8038Neighbours21BLASTN+1574415.gbk
91616423*164434727925Island text1.91219.242837.2822Neighbours21BLASTN1616423.gbk
101671910*169097919070Island text1.614817.509733.8531Neighbours21BLASTN1671910.gbk
111728000*174748119482Island text1.8843117.920732.4446Neighbours21BLASTN1728000.gbk