Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_011566: Shewanella piezotolerans WP3, complete genome

NCBI: NC_011566

Host Lineage: Shewanella piezotolerans; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This species was isolated from deep-sea sediment collected in the west Pacific at a depth of 1914 meters. This organism is able to grow in a pressure range of 0.1 - 50MPa with optimum growth occurring at 20MPa.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11016858104371026853Island text1.710630.935637.2Neighbours21BLASTN+IslandViewer 1016858.gbk
21597751162783830088Island text3.3531227.051820.1691Neighbours21BLASTN+IslandViewer 1597751.gbk
31639444*165938719944Island text1.5832427.300244.2076Neighbours21BLASTN1639444.gbk
43994239*401970925471Island text1.4000826.29544.9324Neighbours21BLASTN3994239.gbk
54309151432901019860Island text1.5569125.476244.9233Neighbours21+4309151.gbk
64709672473260322932Island text1.7128626.045532.7491Neighbours21BLASTN+IslandViewer 4709672.gbk