Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011565: Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2,

NCBI: NC_011565

Host Lineage: Azobacteroides pseudotrichonymphae; Azobacteroides; ; Bacteroidales; Bacteroidetes; Bacteria

General Information: Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 was isolated from a single cell of the protist Pseudotrichonympha grassii which resides in the termite gut. Gram-negative bacteria that are specifically found within the cytoplasm of the parabasalid protist Pseudotrichonympha grassii which resides in the hindgut of the termite Coptotermes formosanus. Candidatus Azobacteroides pseudotrichonymphae may be involved in providing nitrogen compounds for the host.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*2397423974Island text1.8939817.480935.9348Neighbours21BLASTN+1.gbk
269427*10359934173Island text2.5660817.913835.9796Neighbours21BLASTN+69427.gbk
3190406*21248522080Island text1.7389317.22430.5473Neighbours21BLASTN190406.gbk
4385454*40309917646Island text1.6871215.229828.8951Neighbours21BLASTN+385454.gbk
5423000*44147818479Island text1.7948814.886331.7761Neighbours21BLASTN+423000.gbk
6469962*49376323802Island text1.4178816.220831.0269Neighbours21BLASTN469962.gbk
7620801*65959938799Island text1.6390215.039229.4281Neighbours21BLASTN620801.gbk
8665515*68883023316Island text1.7746513.369427.0983Neighbours21BLASTN665515.gbk
9750168*77175321586Island text1.9835715.362129.3722Neighbours21BLASTN+750168.gbk
1077792980201724089Island text2.127317.080134.022Neighbours21BLASTN777929.gbk
1196919898909919902Island text1.5281516.237514.1065Neighbours21BLASTNIslandViewer 969198.gbk
12998000101609918100Island text1.7339815.288613.1076Neighbours21BLASTNIslandViewer 998000.gbk
131022000104587223873Island text1.4976616.208717.5113Neighbours21BLASTNIslandViewer 1022000.gbk
141054414*107623821825Island text1.5591816.379932.5385Neighbours21BLASTN1054414.gbk