Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011529: Thermococcus onnurineus NA1, complete genome

NCBI: NC_011529

Host Lineage: Thermococcus onnurineus; Thermococcus; Thermococcaceae; Thermococcales; Euryarchaeota; Archaea

General Information: Thermococcus onnurineus was isolated from hydrothermal vent sediment at a depth of 1650 meters. Sulfur-reducing hyperthermophilic archaea.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
128891031013021221Island text1.7123636.764333.0628Neighbours313BLASTNIslandViewer 288910.gbk
276629279256826277Island text1.6577736.8934.7464Neighbours313BLASTN+IslandViewer 766292.gbk
3806000*82797121972Island text1.7418731.801752.0039Neighbours313BLASTN806000.gbk
41375920*139450318584Island text1.4990731.693818.1995Neighbours313BLASTN1375920.gbk
51554500158328028781Island text2.2925440.982628.5318Neighbours313BLASTNIslandViewer 1554500.gbk
61685834171682030987Island text1.7762440.232231.9914Neighbours313BLASTN1685834.gbk
71722829*175265229824Island text3.7306646.731924.0987Neighbours36BLASTNIslandViewer 1722829.gbk