Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011420: Rhodospirillum centenum SW, complete genome

NCBI: NC_011420

Host Lineage: Rhodospirillum centenum; Rhodospirillum; Rhodospirillaceae; Rhodospirillales; Proteobacteria; Bacteria

General Information: Rhodospirillum centenum, also called Rhodocista centenaria, is a nitrogen-fixing photoheterotroph with a complex life cycle. R. centenum is one of the few known thermotolerant purple bacteria species with optimal growth temperature of 44 dgrees C and a maximal growth temperature of 48 degrees C. In liquid media this organism is motile by a single polar flagellum. R. centenum produces lateral flagella to become a swarming cell. Under low nutrient conditions R. centenum forms a desiccation- and UV-resistant cyst. R. centenum can often be cultivated from hot springs such as those found at Yellowstone National Park. R. centenum is emerging as a model organism for genetic and molecular genetic analysis of cyst formation.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1362725616419893Island text1.8218716.696114.4195Neighbours11BLASTN+36272.gbk
2698439927529433Island text2.0649121.178623.3831Neighbours11BLASTN+69843.gbk
336550538963524131Island text1.5395615.791313.4036NeighboursBLASTN365505.gbk
485264387609923457Island text1.4729915.004925.667Neighbours11BLASTN+852643.gbk
51178762*119759918838Island text1.5280719.773412.0437Neighbours11BLASTN+IslandViewer 1178762.gbk
62692857*271509922243Island text3.0385618.127415.9249Neighbours11BLASTN2692857.gbk
72803196*282514221947Island text1.9347415.968222.7913Neighbours11BLASTN+2803196.gbk
83582500360636823869Island text2.0561118.784816.8783Neighbours11BLASTN3582500.gbk
93650724*367371922996Island text3.4173317.337320.4489Neighbours11BLASTN3650724.gbk
103822765*384728424520Island text3.5919718.641520.2207Neighbours11BLASTN3822765.gbk
113894660391459519936Island text1.4883116.056722.8408Neighbours11BLASTN3894660.gbk