Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011415: Escherichia coli SE11 chromosome, complete genome

NCBI: NC_011415

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111381*3594824568Island text2.4257934.621231.6388Neighbours51BLASTN+11381.gbk
2146397*16862822232Island text1.7996731.257127.5697Neighbours41BLASTNIslandViewer 146397.gbk
330882533351324689Island text2.0525735.181225.107Neighbours41BLASTN+IslandViewer 308825.gbk
435181037450222693Island text1.4463132.970629.6565Neighbours41BLASTN+IslandViewer 351810.gbk
560037562238522011Island text1.6759529.07231.0335Neighbours41BLASTN+IslandViewer 600375.gbk
664481166715022340Island text1.7373430.693122.7981Neighbours41BLASTN+IslandViewer 644811.gbk
71273551*129701923469Island text2.4558833.099816.0373Neighbours41BLASTN+IslandViewer 1273551.gbk
81472500*149945626957Island text1.8166529.841537.1574Neighbours41BLASTN+IslandViewer 1472500.gbk
91669484168959920116Island text2.1552931.497520.104Neighbours41BLASTN+IslandViewer 1669484.gbk
101715644173937523732Island text1.6303428.097623.9554Neighbours41BLASTN+1715644.gbk
112153243*217768024438Island text1.4622330.575131.6177Neighbours41BLASTN+IslandViewer 2153243.gbk
122248417226677718361Island text1.6626229.626721.8997Neighbours41BLASTNIslandViewer 2248417.gbk
132277559230750729949Island text2.3075836.706720.9327Neighbours41BLASTN+IslandViewer 2277559.gbk
142346474237410327630Island text2.8095936.579325.6117Neighbours41BLASTN2346474.gbk
152732000275607524076Island text1.4595529.000535.5707Neighbours41BLASTN+IslandViewer 2732000.gbk
163006794302526718474Island text1.6515528.65721.5495Neighbours41BLASTN+IslandViewer 3006794.gbk
173217796325443236637Island text5.3918843.081717.3504Neighbours41BLASTN+IslandViewer 3217796.gbk
183443851346459920749Island text2.3926531.991721.325Neighbours41BLASTN+IslandViewer 3443851.gbk
193523364354646923106Island text1.8639529.158628.7185Neighbours41BLASTN+IslandViewer 3523364.gbk
203887997390866920673Island text1.857229.199121.2785Neighbours41BLASTN+3887997.gbk
214006500402820721708Island text1.7842335.407327.9583Neighbours41BLASTN+4006500.gbk
224040211*406573025520Island text2.6202335.138919.2385Neighbours41BLASTNIslandViewer 4040211.gbk
234582388460278120394Island text1.5760937.439253.9043Neighbours41BLASTN+4582388.gbk
244767892*478772819837Island text1.5296632.74221.2352Neighbours41BLASTN+IslandViewer 4767892.gbk