Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011386: Oligotropha carboxidovorans OM5, complete genome

NCBI: NC_011386

Host Lineage: Oligotropha carboxidovorans; Oligotropha; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Oligotropha carboxidovorans is able to use carbon monoxide as an energy source. Isolated in 1978 from wastewater in Göttingen, Germany. Chemolithoautotrophic.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1136223*16996433742Island text2.5458932.999324.4738Neighbours11BLASTN+IslandViewer 136223.gbk
2763111*78777324663Island text2.104126.70732.7024Neighbours11BLASTN763111.gbk
393114096230731168Island text2.1269728.404836.7977Neighbours11BLASTN+IslandViewer 931140.gbk
41727203*175090123699Island text1.5812728.541727.6586Neighbours11BLASTN+1727203.gbk
52073726*211598742262Island text1.5650827.397222.655Neighbours11BLASTN+IslandViewer 2073726.gbk
62762886278874625861Island text1.8069228.839229.1771Neighbours11BLASTN+2762886.gbk
73723019*374899925981Island text1.568527.226532.66Neighbours11BLASTN+IslandViewer 3723019.gbk