Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_011374: Ureaplasma urealyticum serovar 10 str. ATCC 33699 chromosome,

NCBI: NC_011374

Host Lineage: Ureaplasma urealyticum; Ureaplasma; Mycoplasmataceae; Mycoplasmatales; Tenericutes; Bacteria

General Information: Causes a wide range of infections of the urogenital or respiratory tracts. Ureaplasma urealyticum is part of the normal flora of the human urogenital tract. This organism, however, can cause urethritis and has been associated with spontaneous abortion, premature birth, meningitis, and a severe respiratory disease of premature infants. U. urealyticum strains exhibit antigenic heterogeneity. Isolates obtained from human urogenital tract have been classified into 14 recognized serovars which show no serological cross-reactivity with ureaplasmas from other hosts and uniquely express human immuoglobulin A1 protease activity.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1477986932521528Island text1.5816812.469620.9648Neighbours21BLASTN47798.gbk
2142383*16785625474Island text4.0772116.158827.4015Neighbours21BLASTN142383.gbk
320293622893626001Island text1.5513913.101918.6685Neighbours21BLASTN202936.gbk
4255425*28516229738Island text1.8699216.74524.7181Neighbours21BLASTN255425.gbk
5325507*36322137715Island text3.6644418.214128.6584Neighbours21BLASTN325507.gbk
644078646694826163Island text1.6409512.963921.2711Neighbours21BLASTN440786.gbk
7726993*75045623464Island text1.6309215.962421.4094Neighbours21BLASTN726993.gbk