Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011312: Aliivibrio salmonicida LFI1238 chromosome chromosome 1, complete

NCBI: NC_011312

Host Lineage: Aliivibrio salmonicida; Aliivibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: The fish pathogen Aliivibrio salmonicida, formerly Vibrio salmonicida, a halophilic and psychrophilic bacterium, is the causative agent of Hitra disease, also called cold water vibriosis, in Atlantic salmon and sea farmed rainbow trout in marine aquaculture. This disease, a generalized infection of the blood, occurs primarily in late autumn, winter, or early spring when water temperatures are below 15 degrees C. The Gram-negative bacterium causes tissue degradation, hemolysis and sepsis in vivo.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
13060371*308157421204Island text1.5354824.744628.3317Neighbours41BLASTN+3060371.gbk