Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011296: Thermodesulfovibrio yellowstonii DSM 11347, complete genome

NCBI: NC_011296

Host Lineage: Thermodesulfovibrio yellowstonii; Thermodesulfovibrio; Nitrospiraceae; Nitrospirales; Nitrospirae; Bacteria

General Information: This thermophilic sulfate-reducing organism was isolated from a thermal vent in Yellowstone Lake in Wyoming, USA. It has the ability to use sulfate, thiosulfate, and sulfite as terminal electron acceptors. Pyruvate can support fermentative growth.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1102650*12914226493Island text1.4588618.646634.4439Neighbours21BLASTN+102650.gbk
2229494*25216122668Island text1.5251220.178735.3271Neighbours21BLASTN+229494.gbk
328193029998418055Island text1.8285318.743931.2888Neighbours21BLASTN+IslandViewer 281930.gbk
446335948430420946Island text1.7935218.176516.555Neighbours21463359.gbk
5530408*54978019373Island text1.5514219.274923.9392Neighbours21BLASTN530408.gbk
6801612*82480423193Island text1.9160419.96631.6908Neighbours21BLASTN+801612.gbk
7909558*93630226745Island text2.5328628.589242.2628Neighbours21BLASTN+909558.gbk
81039749107609936351Island text1.4971620.057128.8433Neighbours21BLASTN+1039749.gbk
91086223110477418552Island text1.471619.412729.1997Neighbours21BLASTN1086223.gbk
101151346117481423469Island text1.4495519.017529.3215Neighbours21BLASTN1151346.gbk
111299388*132999530608Island text1.8100819.384136.4174Neighbours21BLASTN1299388.gbk
121365998*138483718840Island text1.9861718.774336.1676Neighbours21BLASTN1365998.gbk
131542835*156215919325Island text1.7276718.391331.4472Neighbours21BLASTN+1542835.gbk
141636242165519418953Island text1.666318.60127.4881Neighbours21BLASTN+1636242.gbk
151750771*177311122341Island text1.5731822.723132.5324Neighbours21BLASTN1750771.gbk
161821244184420622963Island text1.4575718.993230.3691Neighbours21BLASTN+1821244.gbk