Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011295: Coprothermobacter proteolyticus DSM 5265, complete genome

NCBI: NC_011295

Host Lineage: Coprothermobacter proteolyticus; Coprothermobacter; Thermodesulfobiaceae; Thermoanaerobacterales; Firmicutes; Bacteria

General Information: This organism was isolated from a thermophilic digestor that was fermenting tannery wastes and cattle manure. Coprothermobacter proteolyticus is a nonmotile, non-spore-forming, rod-shaped, Gram-negative anaerobic bacterium. This organism was originally classified as Thermobacteroides proteolyticus and subsequently assigned to the new genus of Coprothermobacter.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1335005242718928Island text1.5290938.454541.887Neighbours21BLASTN+IslandViewer 33500.gbk
2246000*26577419775Island text1.7472128.241535.3027Neighbours21+246000.gbk
3779569*80261023042Island text1.4403629.231542.2463Neighbours21BLASTN+779569.gbk
4847903*86884620944Island text1.664226.927344.1954Neighbours378BLASTN+847903.gbk
5929293*95447425182Island text1.9529134.86540.2176BLASTN929293.gbk
61120584*114324022657Island text2.1922637.967647.3555Neighbours378BLASTN+1120584.gbk
71218792123666717876Island text1.5002431.310844.4878Neighbours22BLASTN+IslandViewer 1218792.gbk
81263500128870225203Island text1.9277231.523631.8464Neighbours21BLASTN1263500.gbk