Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011206: Acidithiobacillus ferrooxidans ATCC 53993, complete genome

NCBI: NC_011206

Host Lineage: Acidithiobacillus ferrooxidans; Acidithiobacillus; Acidithiobacillaceae; Acidithiobacillales; Proteobacteria; Bacteria

General Information: Acidithiobacillus ferrooxidans, formerly Thiobacillus ferrooxidans, is an acidophilic iron-oxidizing bacterium that is able to grow at a pH range of 1.3 to 4.0. This organism is often identified in acid mine drainage and as a member of microbial consortia involved in bioleaching. Acidithiobacillus ferrooxidans has been identified as the dominant microorganism in percolation and continuous flow mineral leaching bioreactors.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112379114841624626Island text2.1378930.990128.5835Neighbours11BLASTN+IslandViewer 123791.gbk
220000022509925100Island text2.034134.171333.9395Neighbours11BLASTN+IslandViewer 200000.gbk
3262844*29198229139Island text2.1467634.217530.7598Neighbours11BLASTN+IslandViewer 262844.gbk
4469901*48812718227Island text1.4846132.514648.6478Neighbours11BLASTN469901.gbk
586398788911325127Island text1.7861630.888537.6922Neighbours11BLASTN+IslandViewer 863987.gbk
61233985125932625342Island text2.1477134.835922.9569Neighbours11BLASTN+IslandViewer 1233985.gbk
71264639128920124563Island text2.0233934.375529.9226Neighbours11BLASTN+IslandViewer 1264639.gbk
81293880131513221253Island text1.5639530.243827.2597Neighbours11BLASTN+IslandViewer 1293880.gbk
91379068*140505225985Island text1.848134.507428.4667Neighbours11BLASTN+IslandViewer 1379068.gbk
101719000174559926600Island text2.5579138.649125.8272Neighbours41BLASTN+IslandViewer 1719000.gbk
111792621181274020120Island text1.4988429.280226.9034Neighbours11BLASTN+IslandViewer 1792621.gbk
121873297189165018354Island text1.4215431.870126.3309Neighbours54BLASTN+IslandViewer 1873297.gbk
131917408194171024303Island text1.9132337.491623.4653Neighbours11BLASTN+IslandViewer 1917408.gbk
142019577203811818542Island text1.5275427.735926.4222Neighbours11BLASTN+IslandViewer 2019577.gbk
152040000206689226893Island text1.5043628.015620.4714Neighbours11BLASTN+IslandViewer 2040000.gbk
162239109225942920321Island text1.5046929.04329.09Neighbours11BLASTNIslandViewer 2239109.gbk
172369500238909919600Island text1.5882329.339724.7679Neighbours33BLASTNIslandViewer 2369500.gbk
182447905247431126407Island text1.9252233.504627.8186Neighbours11BLASTN+IslandViewer 2447905.gbk
192512667253912326457Island text1.3541730.763632.2877Neighbours11BLASTN+2512667.gbk
202549132259129842167Island text1.679430.433334.1929Neighbours11BLASTN+IslandViewer 2549132.gbk
212685499274159956101Island text1.9443234.133832.0677Neighbours54BLASTNIslandViewer 2685499.gbk