Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011146: Geobacter bemidjiensis Bem, complete genome

NCBI: NC_011146

Host Lineage: Geobacter bemidjiensis; Geobacter; Geobacteraceae; Desulfuromonadales; Proteobacteria; Bacteria

General Information: Geobacter bemidjiensis Bem (ATCC BAA-1014, DSM 16622) was isolated from subsurface sediments collected in Bemidji, Minnesota, USA. This organism, like other Geobacter species, is capable of oxidizing organic compounds and coupling that to reduction of metals.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1639128529321382Island text1.8001827.513431.6497Neighbours11BLASTN+63912.gbk
238271941560632888Island text2.8968839.618333.2217Neighbours11BLASTN+382719.gbk
3482440*51159929160Island text3.0692843.650133.4469Neighbours33BLASTN+IslandViewer 482440.gbk
460342962442921001Island text1.9491128.689425.4915Neighbours11BLASTN603429.gbk
5896000*91840322404Island text1.9344827.559626.879Neighbours11BLASTNIslandViewer 896000.gbk
61293202*131298219781Island text1.5496427.840841.3631Neighbours11BLASTNIslandViewer 1293202.gbk
71429836145430624471Island text2.3372635.998732.0544Neighbours11BLASTN+1429836.gbk
81699702171959919898Island text1.8441427.112732.3466Neighbours11BLASTN1699702.gbk
91998981*205724258262Island text2.1721836.766631.2009Neighbours11BLASTN+IslandViewer 1998981.gbk
102200142224285442713Island text2.5546938.905630.2227Neighbours11BLASTN+IslandViewer 2200142.gbk
112304475*232878024306Island text2.4037729.81334.1387Neighbours11BLASTN2304475.gbk
122485625250703521411Island text2.4577230.043934.3108Neighbours11BLASTNIslandViewer 2485625.gbk
132614500263816423665Island text2.3320632.47731.6951Neighbours11BLASTN2614500.gbk
142916223294545129229Island text1.7424526.47927.3962Neighbours11BLASTNIslandViewer 2916223.gbk
153089297*311454425248Island text1.6586827.884830.7102Neighbours11BLASTN+3089297.gbk
163206000*323271726718Island text2.8823737.039937.3983Neighbours11BLASTN+3206000.gbk
173304416332413419719Island text1.5298225.826838.9816Neighbours11BLASTN+IslandViewer 3304416.gbk
183376816340354026725Island text2.6715739.053127.6815Neighbours11BLASTN+3376816.gbk
193426500347858852089Island text3.1614337.637733.8693Neighbours33BLASTN+IslandViewer 3426500.gbk
203537546*356804230497Island text2.5033832.451532.545Neighbours11BLASTN+IslandViewer 3537546.gbk
213720658*375266832011Island text2.7583340.0134.1645Neighbours11BLASTN+IslandViewer 3720658.gbk
223991683401468923007Island text1.593826.684150.7979Neighbours11BLASTN+3991683.gbk
234070000409209922100Island text2.1460626.29826.0811Neighbours11BLASTN4070000.gbk
244196652421836121710Island text2.3426529.733128.6941Neighbours11BLASTN+IslandViewer 4196652.gbk
254505821453009924279Island text2.2624730.963223.5534Neighbours11BLASTNIslandViewer 4505821.gbk