Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011145: Anaeromyxobacter sp. K, complete genome

NCBI: NC_011145

Host Lineage: Anaeromyxobacter; Anaeromyxobacter; Myxococcaceae; Myxococcales; Proteobacteria; Bacteria

General Information: Nitrogen fixation, Thiosulfate oxidation. As its name suggests this bacteria is capable of anaerobic growth. They are slender Gram-negative rods that exhibit gliding motility and form spore-like structures.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1306623*33037323751Island text1.4603814.907613.6253Neighbours11BLASTN+306623.gbk
21435742145821622475Island text1.5728212.907320.6968Neighbours11BLASTN1435742.gbk
31494521151310618586Island text1.5521912.658111.128Neighbours11BLASTN+IslandViewer 1494521.gbk
41732499176155229054Island text2.8372420.394715.906Neighbours11BLASTN+IslandViewer 1732499.gbk
52190531*221308322553Island text1.5627617.340328.0127Neighbours11BLASTN2190531.gbk
62543321*257209928779Island text1.7025416.999626.3473Neighbours11BLASTN2543321.gbk
73750021378616436144Island text3.0507317.109713.2516Neighbours11BLASTN+IslandViewer 3750021.gbk
84365730438906823339Island text2.2213511.785613.3329Neighbours11IslandViewer 4365730.gbk
94430501*447321342713Island text2.6903216.355213.0991Neighbours11BLASTN+IslandViewer 4430501.gbk
104628000*465886330864Island text2.5957816.090713.7024Neighbours11BLASTN+IslandViewer 4628000.gbk
114797548481912621579Island text1.501113.351215.1297Neighbours11BLASTN+4797548.gbk
124960940498025219313Island text2.1092111.96510.7321Neighbours11BLASTNIslandViewer 4960940.gbk