Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011144: Phenylobacterium zucineum HLK1, complete genome

NCBI: NC_011144

Host Lineage: Phenylobacterium zucineum; Phenylobacterium; Caulobacteraceae; Caulobacterales; Proteobacteria; Bacteria

General Information: This organism was isolated from the human leukemia cell line K562. This facultative intracellular bacteria does not appear to alter the replication or morphology of the cell line.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11073944109429420351Island text1.5790913.251912.8852Neighbours11BLASTN+IslandViewer 1073944.gbk
21264871*129023025360Island text2.8964717.976622.7459Neighbours11BLASTN1264871.gbk
32674242270317628935Island text1.6518516.621615.6742Neighbours11BLASTN+IslandViewer 2674242.gbk
42710876*272938418509Island text1.4792213.594412.1878Neighbours11BLASTN+IslandViewer 2710876.gbk
52770842280037029529Island text1.6354615.239916.3659Neighbours11BLASTNIslandViewer 2770842.gbk