Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011138: Alteromonas macleodii 'Deep ecotype', complete genome

NCBI: NC_011138

Host Lineage: Alteromonas macleodii; Alteromonas; Alteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Alteromonas macleodii 'Deep ecotype' was isolated from seawater obtained at a depth of 3500 meters from the Urania Basin in the Mediterranean Sea by plating. Alteromonas macleodii is an obligate marine bacterium isolated from both surface and deep seawater and often associated with particulate matter.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
110519613372128526Island text2.1348631.615922.2175Neighbours21+105196.gbk
231816833664718480Island text1.6361829.027819.7527Neighbours21BLASTN+IslandViewer 318168.gbk
3397329*41624718919Island text1.6516428.854820.4597Neighbours21BLASTN+IslandViewer 397329.gbk
483158587444242858Island text1.7576636.569451.5238+831585.gbk
51005872102609920228Island text1.8598128.087333.4262Neighbours21BLASTN1005872.gbk
61374520139585921340Island text1.7031129.03926.1877Neighbours21BLASTN+1374520.gbk
72668479268823819760Island text2.1324528.979213.5502Neighbours21BLASTN+2668479.gbk
83182807*321165528849Island text2.1110244.887224.5615Neighbours41BLASTN+3182807.gbk
93881446*390409922654Island text1.562430.222524.5462Neighbours21BLASTN+3881446.gbk