Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_011134: Streptococcus equi subsp. zooepidemicus str. MGCS10565, complete

NCBI: NC_011134

Host Lineage: Streptococcus equi; Streptococcus; Streptococcaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Streptococcus equi subsp. zooepidemicus str. MGCS10565 was responsible for a large and severe epidemic outbreak of poststreptococcal glomerulonephritis. Streptococci are Gram-positive, nonmotile, nonsporeforming, catalase-negative cocci that occur in pairs or chains. Members of this genus vary widely in pathogenic potential. Most streptococci are facultative anaerobes, and some are obligate anaerobes. Serologic grouping is based on antigenic differences in cell wall carbohydrates, in cell wall pili-associated protein, and in the polysaccharide capsule in group B streptococci. Streptococcus equi is comprised of three subspecies equi, zooepidemicus and ruminatorum all of which cause disease in horses, sheep or goats. Streptococcus equi subsp. zooepidemicus has also been isolated from clinical cases in humans and other animals. This species is a Lancefield C group bacterium.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
151218*7644125224Island text2.3265328.571722.129Neighbours21BLASTN+IslandViewer 51218.gbk
231136033894027581Island text2.1476530.236113.7976Neighbours21BLASTN+IslandViewer 311360.gbk
3533679*55941225734Island text1.7326526.945520.8308Neighbours21BLASTN+533679.gbk
41222739*124792825190Island text1.5032825.170227.3541Neighbours21BLASTN+IslandViewer 1222739.gbk
51360122*138509924978Island text1.9048527.253724.8158Neighbours21BLASTN+1360122.gbk
61854868187702422157Island text2.0246526.532113.3526Neighbours21BLASTN1854868.gbk
71951682*197550923828Island text1.9171426.611120.2918Neighbours21BLASTN+1951682.gbk