Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011126: Hydrogenobaculum sp. Y04AAS1, complete genome

NCBI: NC_011126

Host Lineage: Hydrogenobaculum; Hydrogenobaculum; Aquificaceae; Aquificales; Aquificae; Bacteria

General Information: Thermoacidophilic isolate from a stream adjacent to Obsidian Pool in Yellowstone National Park, United States.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1129937*14809918163Island text1.6617615.871233.8044Neighbours21BLASTN+129937.gbk
216387818861624739Island text1.4764917.059828.1094Neighbours21BLASTN163878.gbk
3219379*24579226414Island text1.8344216.755828.3348Neighbours21BLASTN219379.gbk
428192630475922834Island text1.6862716.91733.1831Neighbours21BLASTN+281926.gbk
5555483*59228736805Island text1.8474516.668531.4017Neighbours21BLASTN555483.gbk
6779500*80831928820Island text2.5494625.316138.5026Neighbours21BLASTN779500.gbk
7922182*94229820117Island text1.9512117.251334.4419Neighbours21BLASTN+922182.gbk
8992994*101485121858Island text1.5742319.279732.5382Neighbours21BLASTN992994.gbk
91241655*126656724913Island text2.3437829.592331.7456Neighbours323BLASTN+1241655.gbk
101345984*136835222369Island text1.5841617.68631.703Neighbours21BLASTN+1345984.gbk
111430608*145456623959Island text1.7633716.54331.703Neighbours21BLASTN+1430608.gbk