Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011060: Pelodictyon phaeoclathratiforme BU-1, complete genome

NCBI: NC_011060

Host Lineage: Pelodictyon phaeoclathratiforme; Pelodictyon; Chlorobiaceae; Chlorobiales; Chlorobi; Bacteria

General Information: Pelodictyon phaeoclathratiformeBU-1 was isolated from lake water in 1989. This organism is a phototrophic green sulfur bacteria that inhabits hydrogen sulfide-containing water and freshwater mud, brackish waters and marine environments. This organism forms net-like microcolonies and contains gas vescicles. It is believed that the gas vesicles provide the buoyancy necessary to keep the cell at the optimal depth for photosynthesis.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1244949*26606621118Island text1.5036733.469141.1591Neighbours350BLASTNIslandViewer 244949.gbk
2330437*35211221676Island text1.9201634.882120.5486Neighbours23BLASTN+IslandViewer 330437.gbk
345961550472245108Island text1.4816834.636440.7145Neighbours14BLASTN+IslandViewer 459615.gbk
451487456528450411Island text1.8777335.483831.3878Neighbours41BLASTN+IslandViewer 514874.gbk
51288862*131583126970Island text2.6404439.734227.9531Neighbours21BLASTN+IslandViewer 1288862.gbk
61334836135470619871Island text1.5238834.441941.7804Neighbours14BLASTN+IslandViewer 1334836.gbk
71538375155618617812Island text1.7879233.694123.9432Neighbours21BLASTN+1538375.gbk
81746000176809922100Island text1.709133.314120.8491BLASTNIslandViewer 1746000.gbk
91898224193279834575Island text3.1327139.678222.5176Neighbours21BLASTN+IslandViewer 1898224.gbk
101947795*197153223738Island text1.5951131.32652.7592Neighbours23BLASTN+1947795.gbk
112099255213104831794Island text3.5880643.097415.1123Neighbours23BLASTN+IslandViewer 2099255.gbk
122525367254909923733Island text2.0056736.086525.3947Neighbours350BLASTN+IslandViewer 2525367.gbk
132637893266087922987Island text1.5515734.554653.147Neighbours14BLASTN2637893.gbk
143000067*302749927433Island text1.5782135.008230.2006Neighbours350BLASTN3000067.gbk