Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_011059: Prosthecochloris aestuarii DSM 271, complete genome

NCBI: NC_011059

Host Lineage: Prosthecochloris aestuarii; Prosthecochloris; Chlorobiaceae; Chlorobiales; Chlorobi; Bacteria

General Information: This species is a green sulfur bacterium which forms sedimentary biofilm layers. It has been shown to be associated with coral killed by Black-Band Disease (BBD) a microbial infection of larger coral species. This is a concern for reef conservationists as the larger species are responsible for coral scaffolds, and their reduction by disease would have considerable impact on the reef structure. While there is currently no cause-and-effect link between Prosthecochloris aestuarii and BBD, the species was found on coral which was killed by the disease and was not found on healthy coral or in the surrounding seawater.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112057920579Island text1.5615936.253640.9733Neighbours350BLASTN1.gbk
265414*10535339940Island text1.8771438.005845.7822Neighbours14BLASTN+IslandViewer 65414.gbk
3670345*69409923755Island text2.1094142.500825.5487Neighbours23BLASTN+IslandViewer 670345.gbk
492169094446822779Island text1.4709337.457451.6263Neighbours350BLASTN921690.gbk
51391734141868826955Island text1.6557235.00527.6787Neighbours11BLASTN+1391734.gbk
61896593192809931507Island text2.0350142.296452.6516Neighbours21BLASTNIslandViewer 1896593.gbk
72233993*225747523483Island text1.461438.892349.4214Neighbours364BLASTN2233993.gbk
82272747*229869125945Island text2.2835843.520932.5397Neighbours350BLASTN+IslandViewer 2272747.gbk
92478075*250911431040Island text1.9200639.763420.9189Neighbours23BLASTN+IslandViewer 2478075.gbk